[ bones opens his mouth to reply, that he said enough to keep them away from the man until jim is finally capable of explaining the truth to them ( or as much of the truth as he will allow ), but a ping from his own comm grabs his attention. the reply he's been waiting for from the rest of them - or one of them. it just so happens that it's janeway.

he shouldn't really be surprised. if she knows so much about their future, or at least another version of it, she'll know about khan as well. ]

Captain Janeway is bringing Mr. Chekov and Lieutenant Uhura to the apartment.

[ he looks jim in the eyes tells him with no words exactly what's going on. they have an unmistakable order to stay where they are - janeway has assumed command now that jim is indisposed. ]

And yes, Jim, I did. A little different from your version, but the words "avoid all contact" has been stressed enough.